Biosoft Project

This web application creates ROC curves, calculates area under the curve (AUC) values and confidence intervals for the AUC values, and performs multiple comparisons for ROC curves in a user-friendly, up-to-date and comprehensive way.

This application performs multivariate normality tests and graphical approaches and implements multivariate outlier detection and univariate normality of marginal distributions through plots and tests. Click for TR version. Also, click for R Package version.

Survival analysis is often used in cancer studies. It has been shown that combination of clinical data with genomics increases predictive performance of survival analysis methods. This tool provides a wide range of survival analysis methods for genomic research, especially in cancer studies. The tool includes analysis methods including Kaplan-Meier, Cox regression, Penalized Cox regression and Random Survival Forests. It also offers methods for optimal cutoff point determination for continuous markers.

VoomDDA is a decision support tool developed for RNA-Sequencing datasets to assist researchers in their decisions for diagnostic biomarker discovery and classification problem. VoomDDA consists both sparse and non-sparse statistical learning classifiers adapted with voom method and provides fast, accurate and sparser classification results for RNA-Seq data.

This decision support tool is developed to assist physicians in their decisions to differentially diagnose of patients with acute abdomen. DDNAA includes several diagnostic tests which combine leukocyte count and d-dimer level based on statistical learning approaches.

This web-tool classifies the compounds as drug-like and nondrug-like based on various trained statistical machine learning algorithms.

MLSeq package provides several algorithms including support vector machines (SVM), bagging support vector machines (bagSVM), random forest (RF) and classification and regression trees (CART) to classify sequencing data. Click here for published article.